Single-cell RNA sequencing to track novel perspectives in HSC heterogeneity.

As the importance of cell heterogeneity has begun to be emphasized, single-cell sequencing approaches are rapidly adopted to study cell heterogeneity and cellular evolutionary relationships of various cells, including stem cell populations. The hematopoietic stem and progenitor cell (HSPC) compartment contains HSC hematopoietic stem cells (HSCs) and distinct hematopoietic cells with different abilities to self-renew. These cells perform their own functions to maintain different hematopoietic lineages. Undeniably, single-cell sequencing approaches, including single-cell RNA sequencing (scRNA-seq) technologies, empower more opportunities to study the heterogeneity of normal and pathological HSCs. In this review, we discuss how these scRNA-seq technologies contribute to tracing origin and lineage commitment of HSCs, profiling the bone marrow microenvironment and providing high-resolution dissection of malignant hematopoiesis, leading to exciting new findings in HSC biology.

Zhang P ，Li X ，Pan C ，Zheng X ，Hu B ，Xie R ，Hu J ，Shang X ，Yang H ... -  《Stem Cell Research & Therapy》

In-vivo differentiation of adult hematopoietic stem cells from a single-cell point of view.

Nazaraliyev A ，Richard E ，Sawai CM 《-》

Uncovering the emergence of HSCs in the human fetal bone marrow by single-cell RNA-seq analysis.

During fetal development, human hematopoietic stem cells (HSCs) colonize the bone marrow (BM), where they self-renew and sustain hematopoiesis throughout life; however, the precise timepoint at which HSCs seed the BM is unclear. We used single-cell RNA-sequencing to map the transcriptomic landscape of human fetal BM and spleen hematopoietic stem/progenitor cells (HSPCs) and their microenvironment from 10 to 14 post-conception weeks (PCWs). We further demonstrated that functional HSCs capable of reconstituting long-term multi-lineage hematopoiesis in adult NOG mice do not emerge in the BM until 12 PCWs. In contrast, functional HSCs were not detected in the spleen by 14 PCWs. By comparing the niche-HSPC interactions between BM and spleen, we identified ligand-receptor pairs likely to be involved in fetal HSC migration and maintenance. Our work paves the way for research into the mechanisms underlying HSC colonization in human fetal BM and provides invaluable resources for future studies on HSC development.

Zheng Z ，He H ，Tang XT ，Zhang H ，Gou F ，Yang H ，Cao J ，Shi S ，Yang Z ，Sun G ，Xie X ，Zeng Y ，Wen A ，Lan Y ，Zhou J ，Liu B ，Zhou BO ，Cheng T ，Cheng H ... -  《-》

Comprehensive analysis of single-cell RNA sequencing data from healthy human marrow hematopoietic cells.

Zhao X ，Gao S ，Kajigaya S ，Liu Q ，Wu Z ，Feng X ，Zhang F ，Young NS ... -  《-》

Temporal multimodal single-cell profiling of native hematopoiesis illuminates altered differentiation trajectories with age.

Aging negatively affects hematopoiesis, with consequences for immunity and acquired blood cell disorders. Although impairments in hematopoietic stem cell (HSC) function contribute to this, the in vivo dynamics of such changes remain obscure. Here, we integrate extensive longitudinal functional assessments of HSC-specific lineage tracing with single-cell transcriptome and epitope profiling. In contrast to recent suggestions from single-cell RNA sequencing alone, our data favor a defined structure of HSC/progenitor differentiation that deviates substantially from HSC-derived hematopoiesis following transplantation. Native age-dependent attrition in HSC differentiation manifests as drastically reduced lymphoid output through an early lymphoid-primed progenitor (MPP Ly-I). While in vitro activation fails to rescue lymphoid differentiation from most aged HSCs, robust lymphopoiesis can be achieved by culturing elevated numbers of candidate HSCs. Therefore, our data position rare chronologically aged HSC clones, fully competent at producing lymphoid offspring, as a prime target for approaches aimed to improve lymphopoiesis in the elderly.

Konturek-Ciesla A ，Dhapola P ，Zhang Q ，Säwén P ，Wan H ，Karlsson G ，Bryder D ... -  《-》