RNA editing in plants: A comprehensive survey of bioinformatics tools and databases.

RNA editing is a widespread epitranscriptomic mechanism by which primary RNAs are specifically modified through insertions/deletions or nucleotide substitutions. In plants, RNA editing occurs in organelles (plastids and mitochondria), involves the cytosine to uridine modification (rarely uridine to cytosine) within protein-coding and non-protein-coding regions of RNAs and affects organelle biogenesis, adaptation to environmental changes and signal transduction. High-throughput sequencing technologies have dramatically improved the detection of RNA editing sites at genomic scale. Consequently, different bioinformatics resources have been released to discovery and/or collect novel events. Here, we review and describe the state-of-the-art bioinformatics tools devoted to the characterization of RNA editing in plant organelles with the aim to improve our knowledge about this fascinating but yet under investigated process.

Lo Giudice C ，Hernández I ，Ceci LR ，Pesole G ，Picardi E ... -  《-》

Bioinformatics Resources for RNA Editing.

Diroma MA ，Ciaccia L ，Pesole G ，Picardi E ... -  《-》

REDO: RNA Editing Detection in Plant Organelles Based on Variant Calling Results.

Wu S ，Liu W ，Aljohi HA ，Alromaih SA ，Alanazi IO ，Lin Q ，Yu J ，Hu S ... -  《-》

RNA editing machinery in plant organelles.

Yan J ，Zhang Q ，Yin P 《-》

RNA editing in plant organelles. Why make it easy?

Castandet B ，Araya A 《-》