GigaScience
巨科学
ISSN: 2047-217X
自引率: 5.3%
发文量: 157
被引量: 4068
影响因子: 7.65
通过率: 暂无数据
出版周期: 不定期刊
审稿周期: 1.5
审稿费用: 0
版面费用: 暂无数据
年文章数: 157
国人发稿量: 68

投稿须知/期刊简介:

GigaScience aims to revolutionize publishing by promoting reproducibility of analyses and data dissemination, organization, understanding, and use. As an open access and open-data journal, we publish ALL research objects (data, software tools and workflows) from ''big data'' studies across the entire spectrum of life and biomedical sciences. These resources are managed using the FAIR Principles for scientific data management and stewardship that state that research data should be Findable, Accessible, Interoperable and Reusable.To achieve our goals, the journal has a novel publication format: one that links standard manuscript publication with an extensive database that hosts all associated data and provides data analysis tools and cloud-computing resources. GigaDB provides a direct link between the published manuscript and the relevant supporting data. We have also built GigaGalaxy, a Galaxy-based data analysis platform to host computational methods and workflows, maximizing use of the data, tools and workflows in our papers in a more accessible and reproducible environment.Our scope covers not just ''omic'' type data and the fields of high-throughput biology currently serviced by large public repositories, but also the growing range of more difficult-to-access data, such as imaging, neuroscience, ecology, cohort data, systems biology and other new types of large-scale sharable data.Open Access and Open Data for Open ScienceAll articles and content (including blogs and peer reviews) published by GigaScience are made freely and permanently accessible online immediately upon publication, without subscription charges or registration barriers. All software is published under Open Source Initiative (OSI)-approved open source licences, and supporting data presented under a public domain CC0 waiver. Further information about our open access policies and our article processing charges to support these efforts can be found here.Our PrinciplesBuilt upon the principles of open and FAIR data, reproducibility, usability and utility are our key criteria for publication rather than subjective assessments of impact. Key to achieving this is our open, integrated and custom built GigaDB repository that can help provide a home to all research objects. Open and citable data and metadata are key to reproducible research. Reproducibility is further enhanced via integration with protocol and computational workflow repositories and platforms. Making the research cycle more transparent and open, GigaScience encourages pre-publication discussion and faster scientific communication through integration with the bioRxiv pre-print server and the Publons platform to credit reviewers with citable DOIs. IndexingAll articles published in GigaScience are included in:DOAJMEDLINEPubMedPubMed CentralScience Citation Index ExpandedScopusGoogle ScholarWe feel that the way Impact Factor (IF) is currently used — as a measure of the quality of work a researcher does (sometimes exclusively)— does not properly promote best practices in science (such as early sharing, time spent training and educating junior researchers, collaborations, and more). We have signed The San Francisco Declaration on Research Assessment (DORA) declaration and refuse to use it as as a promotional tool. Note: we do recognize that for some researchers, IF is very important for deciding where they can publish: for those individuals, please do an online search to obtain our IF.

期刊描述简介:

GigaScience aims to revolutionize publishing by promoting reproducibility of analyses and data dissemination, organization, understanding, and use. As an open access and open-data journal, we publish ALL research objects (data, software tools and workflows) from ''big data'' studies across the entire spectrum of life and biomedical sciences. These resources are managed using the FAIR Principles for scientific data management and stewardship that state that research data should be Findable, Accessible, Interoperable and Reusable. To achieve our goals, the journal has a novel publication format: one that links standard manuscript publication with an extensive database that hosts all associated data and provides data analysis tools and cloud-computing resources. GigaDB provides a direct link between the published manuscript and the relevant supporting data. We have also built GigaGalaxy, a Galaxy-based data analysis platform to host computational methods and workflows, maximizing use of the data, tools and workflows in our papers in a more accessible and reproducible environment. Our scope covers not just ''omic'' type data and the fields of high-throughput biology currently serviced by large public repositories, but also the growing range of more difficult-to-access data, such as imaging, neuroscience, ecology, cohort data, systems biology and other new types of large-scale sharable data. Open Access and Open Data for Open Science All articles and content (including blogs and peer reviews) published by GigaScience are made freely and permanently accessible online immediately upon publication, without subscription charges or registration barriers. All software is published under Open Source Initiative (OSI)-approved open source licences, and supporting data presented under a public domain CC0 waiver. Further information about our open access policies and our article processing charges to support these efforts can be found here. Our Principles Built upon the principles of open and FAIR data, reproducibility, usability and utility are our key criteria for publication rather than subjective assessments of impact. Key to achieving this is our open, integrated and custom built GigaDB repository that can help provide a home to all research objects. Open and citable data and metadata are key to reproducible research. Reproducibility is further enhanced via integration with protocol and computational workflow repositories and platforms. Making the research cycle more transparent and open, GigaScience encourages pre-publication discussion and faster scientific communication through integration with the bioRxiv pre-print server and the Publons platform to credit reviewers with citable DOIs.

最新论文
  • De novo assembly of the cattle reference genome with single-molecule sequencing.

    Major advances in selection progress for cattle have been made following the introduction of genomic tools over the past 10-12 years. These tools depend upon the Bos taurus reference genome (UMD3.1.1), which was created using now-outdated technologies and is hindered by a variety of deficiencies and inaccuracies. We present the new reference genome for cattle, ARS-UCD1.2, based on the same animal as the original to facilitate transfer and interpretation of results obtained from the earlier version, but applying a combination of modern technologies in a de novo assembly to increase continuity, accuracy, and completeness. The assembly includes 2.7 Gb and is >250× more continuous than the original assembly, with contig N50 >25 Mb and L50 of 32. We also greatly expanded supporting RNA-based data for annotation that identifies 30,396 total genes (21,039 protein coding). The new reference assembly is accessible in annotated form for public use. We demonstrate that improved continuity of assembled sequence warrants the adoption of ARS-UCD1.2 as the new cattle reference genome and that increased assembly accuracy will benefit future research on this species.

    被引量:244 发表:2020

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